J6_9AXU_001
3D structure
- PDB id
- 9AXU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Non-translating S. pombe ribosome large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.94 Å
Loop
- Sequence
- GACUAC*GGAAAAGAAAA*UGAUU*AAAAG*CUAAAUAUUGG*CAUC
- Length
- 42 nucleotides
- Bulged bases
- 9AXU|1|2|A|67, 9AXU|1|2|U|337, 9AXU|1|4|U|42
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J6_18219.1
- Basepair signature
- cWW-F-cWW-F-cWW-cSH-cWW-cSS-cWW-cSS-tHW-tWW-F-tWW-F-F-cSS-tSS-tHW-cSS-cWW-tHS-cWW-F-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
9AXU|1|2|G|22
9AXU|1|2|A|23
9AXU|1|2|C|24
9AXU|1|2|U|25
9AXU|1|2|A|26
9AXU|1|2|C|27
*
9AXU|1|2|G|58
9AXU|1|2|G|59
9AXU|1|2|A|60
9AXU|1|2|A|61
9AXU|1|2|A|62
9AXU|1|2|A|63
9AXU|1|2|G|64
9AXU|1|2|A|65
9AXU|1|2|A|66
9AXU|1|2|A|67
9AXU|1|2|A|68
*
9AXU|1|2|U|75
9AXU|1|2|G|76
9AXU|1|2|A|77
9AXU|1|2|U|78
9AXU|1|2|U|79
*
9AXU|1|2|A|106
9AXU|1|2|A|107
9AXU|1|2|A|108
9AXU|1|2|A|109
9AXU|1|2|G|110
*
9AXU|1|2|C|329
9AXU|1|2|U|330
9AXU|1|2|A|331
9AXU|1|2|A|332
9AXU|1|2|A|333
9AXU|1|2|U|334
9AXU|1|2|A|335
9AXU|1|2|U|336
9AXU|1|2|U|337
9AXU|1|2|G|338
9AXU|1|2|G|339
*
9AXU|1|4|C|40
9AXU|1|4|A|41
9AXU|1|4|U|42
9AXU|1|4|C|43
Current chains
- Chain 2
- 28S ribosomal RNA
- Chain 4
- 5.8S ribosomal RNA
Nearby chains
- Chain P
- Large ribosomal subunit protein uL4A
- Chain X
- Large ribosomal subunit protein eL13
- Chain Z
- Large ribosomal subunit protein eL15B
- Chain t
- Large ribosomal subunit protein uL29
- Chain u
- Large ribosomal subunit protein eL36B
- Chain v
- Large ribosomal subunit protein eL37B
Coloring options: