3D structure

PDB id
9B11 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human unrotated hibernating without CCDC124 state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.77 Å

Loop

Sequence
CGAG*CGCAA*UGAAG*CGAG*CGG*CACGAG
Length
27 nucleotides
Bulged bases
9B11|1|L5|C|1501, 9B11|1|L5|G|1502
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9B11|1|L5|C|1352
9B11|1|L5|G|1353
9B11|1|L5|A|1354
9B11|1|L5|G|1355
*
9B11|1|L5|C|1384
9B11|1|L5|G|1385
9B11|1|L5|C|1386
9B11|1|L5|A|1387
9B11|1|L5|A|1388
*
9B11|1|L5|U|1395
9B11|1|L5|G|1396
9B11|1|L5|A|1397
9B11|1|L5|A|1398
9B11|1|L5|G|1399
*
9B11|1|L5|C|1418
9B11|1|L5|G|1419
9B11|1|L5|A|1420
9B11|1|L5|G|1421
*
9B11|1|L5|C|1464
9B11|1|L5|G|1465
9B11|1|L5|G|1466
*
9B11|1|L5|C|1499
9B11|1|L5|A|1500
9B11|1|L5|C|1501
9B11|1|L5|G|1502
9B11|1|L5|A|1503
9B11|1|L5|G|1504

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LC
60S ribosomal protein L4
Chain LL
Large ribosomal subunit protein eL13
Chain LQ
60S ribosomal protein L18
Chain La
60S ribosomal protein L27a
Chain Lb
60S ribosomal protein L29
Chain Li
60S ribosomal protein L36

Coloring options:

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