J6_9B24_001

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GAGC*GGAAC*GGAAGAGAAAA*UGAUU*AGGAUGG*CUGAAUACUUC

Length

43 nucleotides

Bulged bases

9B24|1|Y|A|222, 9B24|1|Y|U|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B24|1|Y|G|40
9B24|1|Y|A|41
9B24|1|Y|G|42
9B24|1|Y|C|43
*
9B24|1|Y|G|178
9B24|1|Y|G|179
9B24|1|Y|A|180
9B24|1|Y|A|181
9B24|1|Y|C|182
*
9B24|1|Y|G|213
9B24|1|Y|G|214
9B24|1|Y|A|215
9B24|1|Y|A|216
9B24|1|Y|G|217
9B24|1|Y|A|218
9B24|1|Y|G|219
9B24|1|Y|A|220
9B24|1|Y|A|221
9B24|1|Y|A|222
9B24|1|Y|A|223
*
9B24|1|Y|U|231
9B24|1|Y|G|232
9B24|1|Y|A|233
9B24|1|Y|U|234
9B24|1|Y|U|235
*
9B24|1|Y|A|262
9B24|1|Y|G|263
9B24|1|Y|G|264
9B24|1|Y|A|265
9B24|1|Y|U|266
9B24|1|Y|G|267
9B24|1|Y|G|268
*
9B24|1|Y|C|514
9B24|1|Y|U|515
9B24|1|Y|G|516
9B24|1|Y|A|517
9B24|1|Y|A|518
9B24|1|Y|U|519
9B24|1|Y|A|520
9B24|1|Y|C|521
9B24|1|Y|U|522
9B24|1|Y|U|523
9B24|1|Y|C|524

Current chains

Chain Y

23S rRNA

Nearby chains

Chain z

Large ribosomal subunit protein bL34