J6_9BH5_001
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- GAUUAC*GGAAAAGAAAC*GGAUU*AAGAG*CUAAAUAUCGA*UAUC
- Length
- 42 nucleotides
- Bulged bases
- 9BH5|1|A5|A|66, 9BH5|1|A5|C|335, 9BH5|1|A8|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9BH5|1|A5|G|21
9BH5|1|A5|A|22
9BH5|1|A5|U|23
9BH5|1|A5|U|24
9BH5|1|A5|A|25
9BH5|1|A5|C|26
*
9BH5|1|A5|G|57
9BH5|1|A5|G|58
9BH5|1|A5|A|59
9BH5|1|A5|A|60
9BH5|1|A5|A|61
9BH5|1|A5|A|62
9BH5|1|A5|G|63
9BH5|1|A5|A|64
9BH5|1|A5|A|65
9BH5|1|A5|A|66
9BH5|1|A5|C|67
*
9BH5|1|A5|G|74
9BH5|1|A5|G|75
9BH5|1|A5|A|76
9BH5|1|A5|U|77
9BH5|1|A5|U|78
*
9BH5|1|A5|A|105
9BH5|1|A5|A|106
9BH5|1|A5|G|107
9BH5|1|A5|A|108
9BH5|1|A5|G|109
*
9BH5|1|A5|C|327
9BH5|1|A5|U|328
9BH5|1|A5|A|329
9BH5|1|A5|A|330
9BH5|1|A5|A|331
9BH5|1|A5|U|332
9BH5|1|A5|A|333
9BH5|1|A5|U|334
9BH5|1|A5|C|335
9BH5|1|A5|G|336
9BH5|1|A5|A|337
*
9BH5|1|A8|U|32
9BH5|1|A8|A|33
9BH5|1|A8|U|34
9BH5|1|A8|C|35
Current chains
- Chain A5
- 28S rRNA
- Chain A8
- 5.8S rRNA
Nearby chains
- Chain CC
- Large ribosomal subunit protein uL4
- Chain CL
- Large ribosomal subunit protein eL13
- Chain CN
- Large ribosomal subunit protein eL15
- Chain Ch
- Large ribosomal subunit protein uL29
- Chain Ci
- Large ribosomal subunit protein eL36
- Chain Cj
- Ribosomal protein L37
Coloring options: