Loop J6_9BUP

3D structure

PDB id: 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
Description: Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å

Loop

Sequence: CAAAUC*GAAGAAAAGAAAA*UGAUU*ACCAG*CUAAAUAUAU*AG
Length: 41 nucleotides
Bulged bases: 9BUP|1|AA|A|67, 9BUP|1|AA|A|337
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9BUP|1|AA|C|23
9BUP|1|AA|A|24
9BUP|1|AA|A|25
9BUP|1|AA|A|26
9BUP|1|AA|U|27
9BUP|1|AA|C|28
*
9BUP|1|AA|G|56
9BUP|1|AA|A|57
9BUP|1|AA|A|58
9BUP|1|AA|G|59
9BUP|1|AA|A|60
9BUP|1|AA|A|61
9BUP|1|AA|A|62
9BUP|1|AA|A|63
9BUP|1|AA|G|64
9BUP|1|AA|A|65
9BUP|1|AA|A|66
9BUP|1|AA|A|67
9BUP|1|AA|A|68
*
9BUP|1|AA|U|75
9BUP|1|AA|G|76
9BUP|1|AA|A|77
9BUP|1|AA|U|78
9BUP|1|AA|U|79
*
9BUP|1|AA|A|106
9BUP|1|AA|C|107
9BUP|1|AA|C|108
9BUP|1|AA|A|109
9BUP|1|AA|G|110
*
9BUP|1|AA|C|329
9BUP|1|AA|U|330
9BUP|1|AA|A|331
9BUP|1|AA|A|332
9BUP|1|AA|A|333
9BUP|1|AA|U|334
9BUP|1|AA|A|335
9BUP|1|AA|U|336
9BUP|1|AA|A|337
9BUP|1|AA|U|338
*
9BUP|1|AC|A|37
9BUP|1|AC|G|38

Current chains

Chain AA: 28S ribosomal RNA
Chain AC: 5.8S ribosomal RNA

Nearby chains

Chain A3: 60S ribosomal protein L35
Chain AF: 60S ribosomal protein L4
Chain AL: 60S ribosomal protein L13
Chain AP: Ribosomal protein L15
Chain Ac: Ribosomal protein L37

J6_9BUP_001