J6_9BUP_002
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUUA*UUUG*CA*UGUC*GCCUAUCGAUCC*GGUGUCUGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 9BUP|1|AA|U|2711, 9BUP|1|AA|C|3099, 9BUP|1|AA|U|3158, 9BUP|1|AA|A|3160, 9BUP|1|AA|A|3161
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9BUP|1|AA|U|2709
9BUP|1|AA|U|2710
9BUP|1|AA|U|2711
9BUP|1|AA|A|2712
*
9BUP|1|AA|U|2950
9BUP|1|AA|U|2951
9BUP|1|AA|U|2952
9BUP|1|AA|G|2953
*
9BUP|1|AA|C|2966
9BUP|1|AA|A|2967
*
9BUP|1|AA|U|2989
9BUP|1|AA|G|2990
9BUP|1|AA|U|2991
9BUP|1|AA|C|2992
*
9BUP|1|AA|G|3093
9BUP|1|AA|C|3094
9BUP|1|AA|C|3095
9BUP|1|AA|U|3096
9BUP|1|AA|A|3097
9BUP|1|AA|U|3098
9BUP|1|AA|C|3099
9BUP|1|AA|G|3100
9BUP|1|AA|A|3101
9BUP|1|AA|U|3102
9BUP|1|AA|C|3103
9BUP|1|AA|C|3104
*
9BUP|1|AA|G|3152
9BUP|1|AA|G|3153
9BUP|1|AA|U|3154
9BUP|1|AA|G|3155
9BUP|1|AA|U|3156
9BUP|1|AA|C|3157
9BUP|1|AA|U|3158
9BUP|1|AA|G|3159
9BUP|1|AA|A|3160
9BUP|1|AA|A|3161
9BUP|1|AA|A|3162
9BUP|1|AA|A|3163
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain A4
- 60S ribosomal protein L29
- Chain AD
- 60S ribosomal protein L2
- Chain AO
- 60S ribosomal protein L27a
- Chain AP
- Ribosomal protein L15
- Chain AS
- 60S ribosomal protein L18-2
- Chain AV
- 60S ribosomal protein L21
- Chain Ai
- Large ribosomal subunit protein eL42
- Chain S7
- Transfer RNA; tRNA
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