J6_9CPA_002

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

UGGAUCUUGGCCUCU*ACGCCCCUUG*CGUU*AUGGAAUAG*UGAUUAAGAG*CAUUA

Length

53 nucleotides

Bulged bases

9CPA|1|2|U|679, 9CPA|1|2|U|867, 9CPA|1|2|G|917

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9CPA|1|2|U|672
9CPA|1|2|G|673
9CPA|1|2|G|674
9CPA|1|2|A|675
9CPA|1|2|U|676
9CPA|1|2|C|677
9CPA|1|2|U|678
9CPA|1|2|U|679
9CPA|1|2|G|680
9CPA|1|2|G|681
9CPA|1|2|C|682
9CPA|1|2|C|683
9CPA|1|2|U|684
9CPA|1|2|C|685
9CPA|1|2|U|686
*
9CPA|1|2|A|731
9CPA|1|2|C|732
9CPA|1|2|G|733
9CPA|1|2|C|734
9CPA|1|2|C|735
9CPA|1|2|C|736
9CPA|1|2|C|737
9CPA|1|2|U|738
9CPA|1|2|U|739
9CPA|1|2|G|740
*
9CPA|1|2|C|793
9CPA|1|2|G|794
9CPA|1|2|U|795
9CPA|1|2|U|796
*
9CPA|1|2|A|861
9CPA|1|2|U|862
9CPA|1|2|G|863
9CPA|1|2|G|864
9CPA|1|2|A|865
9CPA|1|2|A|866
9CPA|1|2|U|867
9CPA|1|2|A|868
9CPA|1|2|G|869
*
9CPA|1|2|U|910
9CPA|1|2|G|911
9CPA|1|2|A|912
9CPA|1|2|U|913
9CPA|1|2|U|914
9CPA|1|2|A|915
9CPA|1|2|A|916
9CPA|1|2|G|917
9CPA|1|2|A|918
9CPA|1|2|G|919
*
9CPA|1|2|C|1015
9CPA|1|2|A|1016
9CPA|1|2|U|1017
9CPA|1|2|U|1018
9CPA|1|2|A|1019

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S7

Chain N

Ribosomal protein S11

Chain P

Ribosomal protein S13

Chain Y

Ribosomal protein S15a

Chain Z

uS12

Chain c

40S ribosomal protein S27