J6_9D89_001

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

9D89|1|D|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9D89|1|D|G|45
9D89|1|D|G|46
*
9D89|1|D|C|179
9D89|1|D|G|180
9D89|1|D|A|181
9D89|1|D|A|182
9D89|1|D|C|183
*
9D89|1|D|G|214
9D89|1|D|G|215
9D89|1|D|A|216
9D89|1|D|A|217
9D89|1|D|A|218
9D89|1|D|A|219
9D89|1|D|G|220
9D89|1|D|A|221
9D89|1|D|A|222
9D89|1|D|A|223
9D89|1|D|U|224
*
9D89|1|D|A|231
9D89|1|D|G|232
9D89|1|D|A|233
9D89|1|D|U|234
9D89|1|D|U|235
*
9D89|1|D|A|262
9D89|1|D|G|263
9D89|1|D|C|264
9D89|1|D|A|265
9D89|1|D|G|266
*
9D89|1|D|C|426
9D89|1|D|U|427
9D89|1|D|A|428
9D89|1|D|A|429
9D89|1|D|A|430
9D89|1|D|U|431
9D89|1|D|A|432
9D89|1|D|C|433

Current chains

Chain D

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34