3D structure

PDB id
9D89 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
Experimental method
ELECTRON MICROSCOPY
Resolution
1.95 Å

Loop

Sequence
UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA
Length
41 nucleotides
Bulged bases
9D89|1|D|U|2080, 9D89|1|D|A|2392, 9D89|1|D|G|2432, 9D89|1|D|A|2434
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9D89|1|D|U|2078
9D89|1|D|U|2079
9D89|1|D|U|2080
9D89|1|D|A|2081
*
9D89|1|D|U|2247
9D89|1|D|U|2248
9D89|1|D|U|2249
9D89|1|D|G|2250
*
9D89|1|D|C|2262
9D89|1|D|U|2263
*
9D89|1|D|A|2285
9D89|1|D|G|2286
9D89|1|D|C|2287
9D89|1|D|A|2288
*
9D89|1|D|U|2388
9D89|1|D|C|2389
9D89|1|D|A|2390
9D89|1|D|U|2391
9D89|1|D|A|2392
9D89|1|D|G|2393
9D89|1|D|U|2394
9D89|1|D|G|2395
9D89|1|D|A|2396
9D89|1|D|U|2397
9D89|1|D|C|2398
9D89|1|D|C|2399
*
9D89|1|D|G|2425
9D89|1|D|C|2426
9D89|1|D|U|2427
9D89|1|D|C|2428
9D89|1|D|A|2429
9D89|1|D|A|2430
9D89|1|D|C|2431
9D89|1|D|G|2432
9D89|1|D|G|2433
9D89|1|D|A|2434
9D89|1|D|U|2435
9D89|1|D|A|2436
9D89|1|D|A|2437
9D89|1|D|A|2438
9D89|1|D|A|2439

Current chains

Chain D
23S rRNA

Nearby chains

Chain 0
50S ribosomal protein L33
Chain B
50S ribosomal protein L35
Chain F
50S ribosomal protein L2
Chain I
50S ribosomal protein L15
Chain L
50S ribosomal protein L27
Chain w
50S ribosomal protein L28

Coloring options:

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