J6_9DFE_003

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

9DFE|1|2A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DFE|1|2A|G|44
9DFE|1|2A|C|45
*
9DFE|1|2A|G|179
9DFE|1|2A|G|180
9DFE|1|2A|A|181
9DFE|1|2A|A|182
9DFE|1|2A|C|183
*
9DFE|1|2A|G|214
9DFE|1|2A|G|215
9DFE|1|2A|A|216
9DFE|1|2A|G|217
9DFE|1|2A|A|218
9DFE|1|2A|G|219
9DFE|1|2A|G|220
9DFE|1|2A|A|221
9DFE|1|2A|A|222
9DFE|1|2A|A|223
9DFE|1|2A|G|224
*
9DFE|1|2A|C|231
9DFE|1|2A|G|232
9DFE|1|2A|A|233
9DFE|1|2A|C|234
9DFE|1|2A|U|235
*
9DFE|1|2A|A|262
9DFE|1|2A|C|263
9DFE|1|2A|C|264
9DFE|1|2A|A|265
9DFE|1|2A|G|266
*
9DFE|1|2A|C|426
9DFE|1|2A|U|427
9DFE|1|2A|A|428
9DFE|1|2A|A|429
9DFE|1|2A|G|430
9DFE|1|2A|U|431
9DFE|1|2A|A|432
9DFE|1|2A|C|433

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34