J6_9E16_001

3D structure

PDB id

9E16 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying an E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GC*GGAAC*GGAGGAGAAAA*UGAUU*AACAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

9E16|1|I|A|225

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9E16|1|I|G|45
9E16|1|I|C|46
*
9E16|1|I|G|181
9E16|1|I|G|182
9E16|1|I|A|183
9E16|1|I|A|184
9E16|1|I|C|185
*
9E16|1|I|G|216
9E16|1|I|G|217
9E16|1|I|A|218
9E16|1|I|G|219
9E16|1|I|G|220
9E16|1|I|A|221
9E16|1|I|G|222
9E16|1|I|A|223
9E16|1|I|A|224
9E16|1|I|A|225
9E16|1|I|A|226
*
9E16|1|I|U|233
9E16|1|I|G|234
9E16|1|I|A|235
9E16|1|I|U|236
9E16|1|I|U|237
*
9E16|1|I|A|264
9E16|1|I|A|265
9E16|1|I|C|266
9E16|1|I|A|267
9E16|1|I|G|268
*
9E16|1|I|C|515
9E16|1|I|U|516
9E16|1|I|A|517
9E16|1|I|A|518
9E16|1|I|A|519
9E16|1|I|U|520
9E16|1|I|A|521
9E16|1|I|C|522

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34