J6_9E16_002
3D structure
- PDB id
- 9E16 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying an E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUCA*UUUA*UG*CGCC*GAUUAGUGAUCC*GCUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 9E16|1|I|C|2313, 9E16|1|I|U|2628, 9E16|1|I|G|2666, 9E16|1|I|A|2668, 9E16|1|I|U|2669
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9E16|1|I|U|2311
9E16|1|I|U|2312
9E16|1|I|C|2313
9E16|1|I|A|2314
*
9E16|1|I|U|2481
9E16|1|I|U|2482
9E16|1|I|U|2483
9E16|1|I|A|2484
*
9E16|1|I|U|2496
9E16|1|I|G|2497
*
9E16|1|I|C|2519
9E16|1|I|G|2520
9E16|1|I|C|2521
9E16|1|I|C|2522
*
9E16|1|I|G|2622
9E16|1|I|A|2623
9E16|1|I|U|2624
9E16|1|I|U|2625
9E16|1|I|A|2626
9E16|1|I|G|2627
9E16|1|I|U|2628
9E16|1|I|G|2629
9E16|1|I|A|2630
9E16|1|I|U|2631
9E16|1|I|C|2632
9E16|1|I|C|2633
*
9E16|1|I|G|2659
9E16|1|I|C|2660
9E16|1|I|U|2661
9E16|1|I|C|2662
9E16|1|I|A|2663
9E16|1|I|A|2664
9E16|1|I|C|2665
9E16|1|I|G|2666
9E16|1|I|G|2667
9E16|1|I|A|2668
9E16|1|I|U|2669
9E16|1|I|A|2670
9E16|1|I|A|2671
9E16|1|I|A|2672
9E16|1|I|A|2673
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L35
- Chain C
- 50S ribosomal protein L2
- Chain L
- 50S ribosomal protein L15
- Chain W
- 50S ribosomal protein L27
- Chain b
- 50S ribosomal protein L33 C-
- Chain n
- Transfer RNA; tRNA
- Chain y
- 50S ribosomal protein L28 C-
Coloring options: