Loop J6_9E1S

3D structure

PDB id: 9E1S (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 50S ribosomal subunit
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.39 Å

Loop

Sequence: UUCA*UUUA*UG*CGCC*GAUUAGUGAUCC*GCUCAACGGAUAAAA
Length: 41 nucleotides
Bulged bases: 9E1S|1|I|C|2313, 9E1S|1|I|A|2626, 9E1S|1|I|U|2628, 9E1S|1|I|G|2666, 9E1S|1|I|A|2668, 9E1S|1|I|U|2669
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9E1S|1|I|U|2311
9E1S|1|I|U|2312
9E1S|1|I|C|2313
9E1S|1|I|A|2314
*
9E1S|1|I|U|2481
9E1S|1|I|U|2482
9E1S|1|I|U|2483
9E1S|1|I|A|2484
*
9E1S|1|I|U|2496
9E1S|1|I|G|2497
*
9E1S|1|I|C|2519
9E1S|1|I|G|2520
9E1S|1|I|C|2521
9E1S|1|I|C|2522
*
9E1S|1|I|G|2622
9E1S|1|I|A|2623
9E1S|1|I|U|2624
9E1S|1|I|U|2625
9E1S|1|I|A|2626
9E1S|1|I|G|2627
9E1S|1|I|U|2628
9E1S|1|I|G|2629
9E1S|1|I|A|2630
9E1S|1|I|U|2631
9E1S|1|I|C|2632
9E1S|1|I|C|2633
*
9E1S|1|I|G|2659
9E1S|1|I|C|2660
9E1S|1|I|U|2661
9E1S|1|I|C|2662
9E1S|1|I|A|2663
9E1S|1|I|A|2664
9E1S|1|I|C|2665
9E1S|1|I|G|2666
9E1S|1|I|G|2667
9E1S|1|I|A|2668
9E1S|1|I|U|2669
9E1S|1|I|A|2670
9E1S|1|I|A|2671
9E1S|1|I|A|2672
9E1S|1|I|A|2673

Current chains

Chain I: 23S ribosomal RNA

Nearby chains

Chain 3: 50S ribosomal protein L35
Chain C: 50S ribosomal protein L2
Chain L: 50S ribosomal protein L15
Chain W: 50S ribosomal protein L27
Chain b: 50S ribosomal protein bL33-c minus
Chain y: 50S ribosomal protein bL28-c minus

J6_9E1S_002