J6_9E6Q_001
3D structure
- PDB id
- 9E6Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- G(5MC)*GGAAC*GGAAGGGAAGC*GGACC*GAUAG*CUAAGCAC
- Length
- 36 nucleotides
- Bulged bases
- 9E6Q|1|1|G|204, 9E6Q|1|1|C|463
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J6_56891.1
- Basepair signature
- cWW-cSS-cWW-cSS-tWW-F-tWW-F-F-cWW-tSS-tHW-cWW-cWW-cSS-F-F-tHS-F-cWW-cSS-cSS-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9E6Q|1|1|G|37
9E6Q|1|1|5MC|38
*
9E6Q|1|1|G|160
9E6Q|1|1|G|161
9E6Q|1|1|A|162
9E6Q|1|1|A|163
9E6Q|1|1|C|164
*
9E6Q|1|1|G|195
9E6Q|1|1|G|196
9E6Q|1|1|A|197
9E6Q|1|1|A|198
9E6Q|1|1|G|199
9E6Q|1|1|G|200
9E6Q|1|1|G|201
9E6Q|1|1|A|202
9E6Q|1|1|A|203
9E6Q|1|1|G|204
9E6Q|1|1|C|205
*
9E6Q|1|1|G|212
9E6Q|1|1|G|213
9E6Q|1|1|A|214
9E6Q|1|1|C|215
9E6Q|1|1|C|216
*
9E6Q|1|1|G|243
9E6Q|1|1|A|244
9E6Q|1|1|U|245
9E6Q|1|1|A|246
9E6Q|1|1|G|247
*
9E6Q|1|1|C|458
9E6Q|1|1|U|459
9E6Q|1|1|A|460
9E6Q|1|1|A|461
9E6Q|1|1|G|462
9E6Q|1|1|C|463
9E6Q|1|1|A|464
9E6Q|1|1|C|465
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain AH
- Large ribosomal subunit protein eL13
- Chain AM
- 50S ribosomal protein L15e
- Chain Ad
- Large ribosomal subunit protein eL37
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