J6_9F58_001
3D structure
- PDB id
- 9F58 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Gcn2 dimer bound to the 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAUC*GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG
- Length
- 42 nucleotides
- Bulged bases
- 9F58|1|4|U|34, 9F58|1|a|A|67, 9F58|1|a|U|329
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9F58|1|4|C|32
9F58|1|4|A|33
9F58|1|4|U|34
9F58|1|4|C|35
*
9F58|1|a|G|22
9F58|1|a|A|23
9F58|1|a|G|24
9F58|1|a|U|25
9F58|1|a|A|26
9F58|1|a|C|27
*
9F58|1|a|G|58
9F58|1|a|G|59
9F58|1|a|A|60
9F58|1|a|A|61
9F58|1|a|A|62
9F58|1|a|A|63
9F58|1|a|G|64
9F58|1|a|A|65
9F58|1|a|A|66
9F58|1|a|A|67
9F58|1|a|C|68
*
9F58|1|a|G|75
9F58|1|a|G|76
9F58|1|a|A|77
9F58|1|a|U|78
9F58|1|a|U|79
*
9F58|1|a|A|106
9F58|1|a|A|107
9F58|1|a|A|108
9F58|1|a|A|109
9F58|1|a|G|110
*
9F58|1|a|C|321
9F58|1|a|U|322
9F58|1|a|A|323
9F58|1|a|A|324
9F58|1|a|A|325
9F58|1|a|U|326
9F58|1|a|A|327
9F58|1|a|U|328
9F58|1|a|U|329
9F58|1|a|G|330
9F58|1|a|G|331
Current chains
- Chain 4
- 5.8S rRNA
- Chain a
- 25S rRNA
Nearby chains
- Chain 3
- 60S ribosomal protein L4-A
- Chain T
- 60S ribosomal protein L35-A
- Chain U
- 60S ribosomal protein L36-A
- Chain V
- 60S ribosomal protein L37-A
- Chain m
- 60S ribosomal protein L13-A
- Chain o
- 60S ribosomal protein L15-A
Coloring options: