J6_9F9S_001
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
- Length
- 42 nucleotides
- Bulged bases
- 9F9S|1|L1|A|67, 9F9S|1|L1|U|329, 9F9S|1|L2|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9F9S|1|L1|G|22
9F9S|1|L1|A|23
9F9S|1|L1|G|24
9F9S|1|L1|U|25
9F9S|1|L1|A|26
9F9S|1|L1|C|27
*
9F9S|1|L1|G|58
9F9S|1|L1|G|59
9F9S|1|L1|A|60
9F9S|1|L1|A|61
9F9S|1|L1|A|62
9F9S|1|L1|A|63
9F9S|1|L1|G|64
9F9S|1|L1|A|65
9F9S|1|L1|A|66
9F9S|1|L1|A|67
9F9S|1|L1|C|68
*
9F9S|1|L1|G|75
9F9S|1|L1|G|76
9F9S|1|L1|A|77
9F9S|1|L1|U|78
9F9S|1|L1|U|79
*
9F9S|1|L1|A|106
9F9S|1|L1|A|107
9F9S|1|L1|A|108
9F9S|1|L1|A|109
9F9S|1|L1|G|110
*
9F9S|1|L1|C|321
9F9S|1|L1|U|322
9F9S|1|L1|A|323
9F9S|1|L1|A|324
9F9S|1|L1|A|325
9F9S|1|L1|U|326
9F9S|1|L1|A|327
9F9S|1|L1|U|328
9F9S|1|L1|U|329
9F9S|1|L1|G|330
9F9S|1|L1|G|331
*
9F9S|1|L2|C|32
9F9S|1|L2|A|33
9F9S|1|L2|U|34
9F9S|1|L2|C|35
Current chains
- Chain L1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)
- Chain L2
- Saccharomyces cerevisiae S288C 5.8S ribosomal RNA
Nearby chains
- Chain LG
- 60S ribosomal protein L13-A
- Chain LI
- 60S ribosomal protein L15-A
- Chain Lh
- 60S ribosomal protein L37-A
- Chain Li
- 60S ribosomal protein L36-A
- Chain Lj
- 60S ribosomal protein L35-A
- Chain Ly
- 60S ribosomal protein L4-A
Coloring options: