J6_9F9S_004
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- U(OMU)GA*UUUG*CA*UGUC*GCCUAUCGAUCC*(OMG)GUGCCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 9F9S|1|M1|G|2418, 9F9S|1|M1|C|2760, 9F9S|1|M1|A|2799, 9F9S|1|M1|A|2801, 9F9S|1|M1|A|2802
- QA status
- Modified nucleotides: OMU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9F9S|1|M1|U|2416
9F9S|1|M1|OMU|2417
9F9S|1|M1|G|2418
9F9S|1|M1|A|2419
*
9F9S|1|M1|U|2611
9F9S|1|M1|U|2612
9F9S|1|M1|U|2613
9F9S|1|M1|G|2614
*
9F9S|1|M1|C|2627
9F9S|1|M1|A|2628
*
9F9S|1|M1|U|2650
9F9S|1|M1|G|2651
9F9S|1|M1|U|2652
9F9S|1|M1|C|2653
*
9F9S|1|M1|G|2754
9F9S|1|M1|C|2755
9F9S|1|M1|C|2756
9F9S|1|M1|U|2757
9F9S|1|M1|A|2758
9F9S|1|M1|U|2759
9F9S|1|M1|C|2760
9F9S|1|M1|G|2761
9F9S|1|M1|A|2762
9F9S|1|M1|U|2763
9F9S|1|M1|C|2764
9F9S|1|M1|C|2765
*
9F9S|1|M1|OMG|2793
9F9S|1|M1|G|2794
9F9S|1|M1|U|2795
9F9S|1|M1|G|2796
9F9S|1|M1|C|2797
9F9S|1|M1|C|2798
9F9S|1|M1|A|2799
9F9S|1|M1|G|2800
9F9S|1|M1|A|2801
9F9S|1|M1|A|2802
9F9S|1|M1|A|2803
9F9S|1|M1|A|2804
Current chains
- Chain M1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications
Nearby chains
- Chain DQ
- Transfer RNA; tRNA
- Chain MI
- 60S ribosomal protein L15-A
- Chain ML
- 60S ribosomal protein L18-A
- Chain MO
- 60S ribosomal protein L21-A
- Chain Mc
- 60S ribosomal protein L42-A
- Chain Mp
- 60S ribosomal protein L29
- Chain Mq
- 60S ribosomal protein L28
- Chain Mw
- 60S ribosomal protein L2-A
Coloring options: