J6_9G6J_001
3D structure
- PDB id
- 9G6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- GACUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
- Length
- 42 nucleotides
- Bulged bases
- 9G6J|1|1|A|66, 9G6J|1|1|U|329, 9G6J|1|4|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9G6J|1|1|G|21
9G6J|1|1|A|22
9G6J|1|1|C|23
9G6J|1|1|U|24
9G6J|1|1|A|25
9G6J|1|1|C|26
*
9G6J|1|1|G|57
9G6J|1|1|G|58
9G6J|1|1|A|59
9G6J|1|1|A|60
9G6J|1|1|A|61
9G6J|1|1|A|62
9G6J|1|1|G|63
9G6J|1|1|A|64
9G6J|1|1|A|65
9G6J|1|1|A|66
9G6J|1|1|C|67
*
9G6J|1|1|G|74
9G6J|1|1|G|75
9G6J|1|1|A|76
9G6J|1|1|U|77
9G6J|1|1|U|78
*
9G6J|1|1|A|105
9G6J|1|1|A|106
9G6J|1|1|A|107
9G6J|1|1|A|108
9G6J|1|1|G|109
*
9G6J|1|1|C|321
9G6J|1|1|U|322
9G6J|1|1|A|323
9G6J|1|1|A|324
9G6J|1|1|A|325
9G6J|1|1|U|326
9G6J|1|1|A|327
9G6J|1|1|U|328
9G6J|1|1|U|329
9G6J|1|1|G|330
9G6J|1|1|G|331
*
9G6J|1|4|C|32
9G6J|1|4|A|33
9G6J|1|4|U|34
9G6J|1|4|C|35
Current chains
- Chain 1
- 25S rRNA
- Chain 4
- 5.8S rRNA
Nearby chains
- Chain AI
- Ribosomal 60S subunit protein L35A
- Chain AJ
- 60S ribosomal protein L36
- Chain AK
- Ribosomal protein L37
- Chain l
- Ribosomal 60S subunit protein L4B
- Chain t
- 60S ribosomal protein L13
- Chain v
- Ribosomal protein L15
Coloring options: