J6_9GFT_001

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

9GFT|1|AV|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9GFT|1|AV|G|45
9GFT|1|AV|G|46
*
9GFT|1|AV|C|179
9GFT|1|AV|G|180
9GFT|1|AV|A|181
9GFT|1|AV|A|182
9GFT|1|AV|C|183
*
9GFT|1|AV|G|214
9GFT|1|AV|G|215
9GFT|1|AV|A|216
9GFT|1|AV|A|217
9GFT|1|AV|A|218
9GFT|1|AV|A|219
9GFT|1|AV|G|220
9GFT|1|AV|A|221
9GFT|1|AV|A|222
9GFT|1|AV|A|223
9GFT|1|AV|U|224
*
9GFT|1|AV|A|231
9GFT|1|AV|G|232
9GFT|1|AV|A|233
9GFT|1|AV|U|234
9GFT|1|AV|U|235
*
9GFT|1|AV|A|262
9GFT|1|AV|G|263
9GFT|1|AV|C|264
9GFT|1|AV|A|265
9GFT|1|AV|G|266
*
9GFT|1|AV|C|426
9GFT|1|AV|U|427
9GFT|1|AV|A|428
9GFT|1|AV|A|429
9GFT|1|AV|A|430
9GFT|1|AV|U|431
9GFT|1|AV|A|432
9GFT|1|AV|C|433

Current chains

Chain AV

23S RNA

Nearby chains

Chain Ax

Large ribosomal subunit protein bL34