3D structure

PDB id
9GFT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HrpA-bound E. coli disome, Class I
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA
Length
41 nucleotides
Bulged bases
9GFT|1|N|U|2076, 9GFT|1|N|A|2388, 9GFT|1|N|U|2390, 9GFT|1|N|G|2428, 9GFT|1|N|A|2430, 9GFT|1|N|U|2431, 9GFT|1|N|A|2434
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9GFT|1|N|U|2074
9GFT|1|N|U|2075
9GFT|1|N|U|2076
9GFT|1|N|A|2077
*
9GFT|1|N|U|2243
9GFT|1|N|U|2244
9GFT|1|N|U|2245
9GFT|1|N|G|2246
*
9GFT|1|N|C|2258
9GFT|1|N|U|2259
*
9GFT|1|N|A|2281
9GFT|1|N|G|2282
9GFT|1|N|C|2283
9GFT|1|N|A|2284
*
9GFT|1|N|U|2384
9GFT|1|N|C|2385
9GFT|1|N|A|2386
9GFT|1|N|U|2387
9GFT|1|N|A|2388
9GFT|1|N|G|2389
9GFT|1|N|U|2390
9GFT|1|N|G|2391
9GFT|1|N|A|2392
9GFT|1|N|U|2393
9GFT|1|N|C|2394
9GFT|1|N|C|2395
*
9GFT|1|N|G|2421
9GFT|1|N|C|2422
9GFT|1|N|U|2423
9GFT|1|N|C|2424
9GFT|1|N|A|2425
9GFT|1|N|A|2426
9GFT|1|N|C|2427
9GFT|1|N|G|2428
9GFT|1|N|G|2429
9GFT|1|N|A|2430
9GFT|1|N|U|2431
9GFT|1|N|A|2432
9GFT|1|N|A|2433
9GFT|1|N|A|2434
9GFT|1|N|A|2435

Current chains

Chain N
23S RNA

Nearby chains

Chain P
Large ribosomal subunit protein uL2
Chain Y
Large ribosomal subunit protein uL15
Chain j
Large ribosomal subunit protein bL27
Chain k
Large ribosomal subunit protein bL28
Chain o
Large ribosomal subunit protein bL33
Chain q
Large ribosomal subunit protein bL35

Coloring options:

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