J6_9GFT_003
3D structure
- PDB id
- 9GFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 9GFT|1|N|U|2076, 9GFT|1|N|A|2388, 9GFT|1|N|U|2390, 9GFT|1|N|G|2428, 9GFT|1|N|A|2430, 9GFT|1|N|U|2431, 9GFT|1|N|A|2434
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9GFT|1|N|U|2074
9GFT|1|N|U|2075
9GFT|1|N|U|2076
9GFT|1|N|A|2077
*
9GFT|1|N|U|2243
9GFT|1|N|U|2244
9GFT|1|N|U|2245
9GFT|1|N|G|2246
*
9GFT|1|N|C|2258
9GFT|1|N|U|2259
*
9GFT|1|N|A|2281
9GFT|1|N|G|2282
9GFT|1|N|C|2283
9GFT|1|N|A|2284
*
9GFT|1|N|U|2384
9GFT|1|N|C|2385
9GFT|1|N|A|2386
9GFT|1|N|U|2387
9GFT|1|N|A|2388
9GFT|1|N|G|2389
9GFT|1|N|U|2390
9GFT|1|N|G|2391
9GFT|1|N|A|2392
9GFT|1|N|U|2393
9GFT|1|N|C|2394
9GFT|1|N|C|2395
*
9GFT|1|N|G|2421
9GFT|1|N|C|2422
9GFT|1|N|U|2423
9GFT|1|N|C|2424
9GFT|1|N|A|2425
9GFT|1|N|A|2426
9GFT|1|N|C|2427
9GFT|1|N|G|2428
9GFT|1|N|G|2429
9GFT|1|N|A|2430
9GFT|1|N|U|2431
9GFT|1|N|A|2432
9GFT|1|N|A|2433
9GFT|1|N|A|2434
9GFT|1|N|A|2435
Current chains
- Chain N
- 23S RNA
Nearby chains
- Chain P
- Large ribosomal subunit protein uL2
- Chain Y
- Large ribosomal subunit protein uL15
- Chain j
- Large ribosomal subunit protein bL27
- Chain k
- Large ribosomal subunit protein bL28
- Chain o
- Large ribosomal subunit protein bL33
- Chain q
- Large ribosomal subunit protein bL35
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