J6_9GMO_001
3D structure
- PDB id
- 9GMO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- GGCGAC*GGAGAAGAAAC*GGAUU*AAGAG*CUAAAUAC*GUC
- Length
- 38 nucleotides
- Bulged bases
- 9GMO|1|A|A|66, 9GMO|1|C|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9GMO|1|A|G|21
9GMO|1|A|G|22
9GMO|1|A|C|23
9GMO|1|A|G|24
9GMO|1|A|A|25
9GMO|1|A|C|26
*
9GMO|1|A|G|57
9GMO|1|A|G|58
9GMO|1|A|A|59
9GMO|1|A|G|60
9GMO|1|A|A|61
9GMO|1|A|A|62
9GMO|1|A|G|63
9GMO|1|A|A|64
9GMO|1|A|A|65
9GMO|1|A|A|66
9GMO|1|A|C|67
*
9GMO|1|A|G|74
9GMO|1|A|G|75
9GMO|1|A|A|76
9GMO|1|A|U|77
9GMO|1|A|U|78
*
9GMO|1|A|A|105
9GMO|1|A|A|106
9GMO|1|A|G|107
9GMO|1|A|A|108
9GMO|1|A|G|109
*
9GMO|1|A|C|332
9GMO|1|A|U|333
9GMO|1|A|A|334
9GMO|1|A|A|335
9GMO|1|A|A|336
9GMO|1|A|U|337
9GMO|1|A|A|338
9GMO|1|A|C|339
*
9GMO|1|C|G|33
9GMO|1|C|U|34
9GMO|1|C|C|35
Current chains
- Chain A
- 28S rRNA
- Chain C
- 5.8S rRNA
Nearby chains
- Chain b
- 60S ribosomal protein L35
- Chain c
- 60S ribosomal protein L36
- Chain d
- 60S ribosomal protein L37
- Chain l
- 60S ribosomal protein L15
- Chain r
- 60S ribosomal protein L13
Coloring options: