3D structure

PDB id
9GMO (explore in PDB, NAKB, or RNA 3D Hub)
Description
eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16
Experimental method
ELECTRON MICROSCOPY
Resolution
2.59 Å

Loop

Sequence
(PSU)UGA*UUUG*CA*(OMU)(OMG)UC*GCCUCACGAUCC*(OMG)GUGUCAGAAAA
Length
38 nucleotides
Bulged bases
9GMO|1|A|G|3922, 9GMO|1|A|C|4337, 9GMO|1|A|A|4376, 9GMO|1|A|A|4378, 9GMO|1|A|A|4379
QA status
Modified nucleotides: PSU, OMU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9GMO|1|A|PSU|3920
9GMO|1|A|U|3921
9GMO|1|A|G|3922
9GMO|1|A|A|3923
*
9GMO|1|A|U|4188
9GMO|1|A|U|4189
9GMO|1|A|U|4190
9GMO|1|A|G|4191
*
9GMO|1|A|C|4204
9GMO|1|A|A|4205
*
9GMO|1|A|OMU|4227
9GMO|1|A|OMG|4228
9GMO|1|A|U|4229
9GMO|1|A|C|4230
*
9GMO|1|A|G|4331
9GMO|1|A|C|4332
9GMO|1|A|C|4333
9GMO|1|A|U|4334
9GMO|1|A|C|4335
9GMO|1|A|A|4336
9GMO|1|A|C|4337
9GMO|1|A|G|4338
9GMO|1|A|A|4339
9GMO|1|A|U|4340
9GMO|1|A|C|4341
9GMO|1|A|C|4342
*
9GMO|1|A|OMG|4370
9GMO|1|A|G|4371
9GMO|1|A|U|4372
9GMO|1|A|G|4373
9GMO|1|A|U|4374
9GMO|1|A|C|4375
9GMO|1|A|A|4376
9GMO|1|A|G|4377
9GMO|1|A|A|4378
9GMO|1|A|A|4379
9GMO|1|A|A|4380
9GMO|1|A|A|4381

Current chains

Chain A
28S rRNA

Nearby chains

Chain D
60S ribosomal protein L8
Chain K
60S ribosomal protein L18
Chain N
60S ribosomal protein L21
Chain U
60S ribosomal protein L27a
Chain V
60S ribosomal protein L29
Chain i
60S ribosomal protein L36a
Chain l
60S ribosomal protein L15

Coloring options:

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