J6_9H3G_001
3D structure
- PDB id
- 9H3G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs and mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.82 Å
Loop
- Sequence
- CAUC*GAUUAC*GGAAAAGAAAC*GGAUU*AAGAG*CUAAAUACGGG
- Length
- 42 nucleotides
- Bulged bases
- 9H3G|1|3|U|38, 9H3G|1|A|A|65, 9H3G|1|A|G|326
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9H3G|1|3|C|36
9H3G|1|3|A|37
9H3G|1|3|U|38
9H3G|1|3|C|39
*
9H3G|1|A|G|20
9H3G|1|A|A|21
9H3G|1|A|U|22
9H3G|1|A|U|23
9H3G|1|A|A|24
9H3G|1|A|C|25
*
9H3G|1|A|G|56
9H3G|1|A|G|57
9H3G|1|A|A|58
9H3G|1|A|A|59
9H3G|1|A|A|60
9H3G|1|A|A|61
9H3G|1|A|G|62
9H3G|1|A|A|63
9H3G|1|A|A|64
9H3G|1|A|A|65
9H3G|1|A|C|66
*
9H3G|1|A|G|73
9H3G|1|A|G|74
9H3G|1|A|A|75
9H3G|1|A|U|76
9H3G|1|A|U|77
*
9H3G|1|A|A|104
9H3G|1|A|A|105
9H3G|1|A|G|106
9H3G|1|A|A|107
9H3G|1|A|G|108
*
9H3G|1|A|C|318
9H3G|1|A|U|319
9H3G|1|A|A|320
9H3G|1|A|A|321
9H3G|1|A|A|322
9H3G|1|A|U|323
9H3G|1|A|A|324
9H3G|1|A|C|325
9H3G|1|A|G|326
9H3G|1|A|G|327
9H3G|1|A|G|328
Current chains
- Chain 3
- Ribosomal RNA 5.8S
- Chain A
- Ribosomal RNA 25S
Nearby chains
- Chain AG
- Large ribosomal subunit protein eL13z
- Chain AX
- Large ribosomal subunit protein eL36y
- Chain AY
- Large ribosomal subunit protein eL37z
- Chain BP
- Large ribosomal subunit protein uL29x
- Chain BT
- Large ribosomal subunit protein uL4z
- Chain Ea
- Large ribosomal subunit protein eL15z
Coloring options: