J6_9H3O_001

3D structure

PDB id

9H3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C_(L22)-_GAC

Experimental method

ELECTRON MICROSCOPY

Resolution

4.54 Å

Loop

Sequence

GG*CGAAC*GAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

35 nucleotides

Bulged bases

9H3O|1|A|A|223, 9H3O|1|A|U|431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H3O|1|A|G|45
9H3O|1|A|G|46
*
9H3O|1|A|C|179
9H3O|1|A|G|180
9H3O|1|A|A|181
9H3O|1|A|A|182
9H3O|1|A|C|183
*
9H3O|1|A|G|215
9H3O|1|A|A|216
9H3O|1|A|A|217
9H3O|1|A|A|218
9H3O|1|A|A|219
9H3O|1|A|G|220
9H3O|1|A|A|221
9H3O|1|A|A|222
9H3O|1|A|A|223
9H3O|1|A|U|224
*
9H3O|1|A|A|231
9H3O|1|A|G|232
9H3O|1|A|A|233
9H3O|1|A|U|234
9H3O|1|A|U|235
*
9H3O|1|A|A|262
9H3O|1|A|G|263
9H3O|1|A|C|264
9H3O|1|A|A|265
9H3O|1|A|G|266
*
9H3O|1|A|C|426
9H3O|1|A|U|427
9H3O|1|A|A|428
9H3O|1|A|A|429
9H3O|1|A|A|430
9H3O|1|A|U|431
9H3O|1|A|A|432
9H3O|1|A|C|433

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34