3D structure

PDB id
9H3Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
50S subunit precursor C-CP_YjgA_(L22)-~H61
Experimental method
ELECTRON MICROSCOPY
Resolution
4.02 Å

Loop

Sequence
UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA
Length
41 nucleotides
Bulged bases
9H3Q|1|A|U|2076, 9H3Q|1|A|U|2387, 9H3Q|1|A|A|2388, 9H3Q|1|A|U|2390, 9H3Q|1|A|G|2428, 9H3Q|1|A|A|2430, 9H3Q|1|A|U|2431
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9H3Q|1|A|U|2074
9H3Q|1|A|U|2075
9H3Q|1|A|U|2076
9H3Q|1|A|A|2077
*
9H3Q|1|A|U|2243
9H3Q|1|A|U|2244
9H3Q|1|A|U|2245
9H3Q|1|A|G|2246
*
9H3Q|1|A|C|2258
9H3Q|1|A|U|2259
*
9H3Q|1|A|A|2281
9H3Q|1|A|G|2282
9H3Q|1|A|C|2283
9H3Q|1|A|A|2284
*
9H3Q|1|A|U|2384
9H3Q|1|A|C|2385
9H3Q|1|A|A|2386
9H3Q|1|A|U|2387
9H3Q|1|A|A|2388
9H3Q|1|A|G|2389
9H3Q|1|A|U|2390
9H3Q|1|A|G|2391
9H3Q|1|A|A|2392
9H3Q|1|A|U|2393
9H3Q|1|A|C|2394
9H3Q|1|A|C|2395
*
9H3Q|1|A|G|2421
9H3Q|1|A|C|2422
9H3Q|1|A|U|2423
9H3Q|1|A|C|2424
9H3Q|1|A|A|2425
9H3Q|1|A|A|2426
9H3Q|1|A|C|2427
9H3Q|1|A|G|2428
9H3Q|1|A|G|2429
9H3Q|1|A|A|2430
9H3Q|1|A|U|2431
9H3Q|1|A|A|2432
9H3Q|1|A|A|2433
9H3Q|1|A|A|2434
9H3Q|1|A|A|2435

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain C
UPF0307 protein YjgA
Chain L
Large ribosomal subunit protein uL15
Chain W
Large ribosomal subunit protein bL27
Chain X
Large ribosomal subunit protein bL28

Coloring options:

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