J6_9H3W_001

3D structure

PDB id

9H3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_H68

Experimental method

ELECTRON MICROSCOPY

Resolution

5.38 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

9H3W|1|A|A|223, 9H3W|1|A|A|265, 9H3W|1|A|A|428

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H3W|1|A|G|45
9H3W|1|A|G|46
*
9H3W|1|A|C|179
9H3W|1|A|G|180
9H3W|1|A|A|181
9H3W|1|A|A|182
9H3W|1|A|C|183
*
9H3W|1|A|G|214
9H3W|1|A|G|215
9H3W|1|A|A|216
9H3W|1|A|A|217
9H3W|1|A|A|218
9H3W|1|A|A|219
9H3W|1|A|G|220
9H3W|1|A|A|221
9H3W|1|A|A|222
9H3W|1|A|A|223
9H3W|1|A|U|224
*
9H3W|1|A|A|231
9H3W|1|A|G|232
9H3W|1|A|A|233
9H3W|1|A|U|234
9H3W|1|A|U|235
*
9H3W|1|A|A|262
9H3W|1|A|G|263
9H3W|1|A|C|264
9H3W|1|A|A|265
9H3W|1|A|G|266
*
9H3W|1|A|C|426
9H3W|1|A|U|427
9H3W|1|A|A|428
9H3W|1|A|A|429
9H3W|1|A|A|430
9H3W|1|A|U|431
9H3W|1|A|A|432
9H3W|1|A|C|433

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34