J6_9H6I_002
3D structure
- PDB id
- 9H6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- (PSU)UGA*UUUG*CA*(UY1)(OMG)UC*GCCUAUCGAUCC*(OMG)GUGUCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 9H6I|1|A|G|2416, 9H6I|1|A|C|2759, 9H6I|1|A|A|2798, 9H6I|1|A|A|2800, 9H6I|1|A|A|2801
- QA status
- Modified nucleotides: PSU, UY1, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9H6I|1|A|PSU|2414
9H6I|1|A|U|2415
9H6I|1|A|G|2416
9H6I|1|A|A|2417
*
9H6I|1|A|U|2610
9H6I|1|A|U|2611
9H6I|1|A|U|2612
9H6I|1|A|G|2613
*
9H6I|1|A|C|2626
9H6I|1|A|A|2627
*
9H6I|1|A|UY1|2649
9H6I|1|A|OMG|2650
9H6I|1|A|U|2651
9H6I|1|A|C|2652
*
9H6I|1|A|G|2753
9H6I|1|A|C|2754
9H6I|1|A|C|2755
9H6I|1|A|U|2756
9H6I|1|A|A|2757
9H6I|1|A|U|2758
9H6I|1|A|C|2759
9H6I|1|A|G|2760
9H6I|1|A|A|2761
9H6I|1|A|U|2762
9H6I|1|A|C|2763
9H6I|1|A|C|2764
*
9H6I|1|A|OMG|2792
9H6I|1|A|G|2793
9H6I|1|A|U|2794
9H6I|1|A|G|2795
9H6I|1|A|U|2796
9H6I|1|A|C|2797
9H6I|1|A|A|2798
9H6I|1|A|G|2799
9H6I|1|A|A|2800
9H6I|1|A|A|2801
9H6I|1|A|A|2802
9H6I|1|A|A|2803
Current chains
- Chain A
- Ribosomal RNA 25S
Nearby chains
- Chain AJ
- Large ribosomal subunit protein eL18x
- Chain AM
- Large ribosomal subunit protein eL21z/eL21y
- Chain AR
- 60S ribosomal protein L29
- Chain BD
- Large ribosomal subunit protein eL42z/eL42y
- Chain BQ
- Large ribosomal subunit protein uL2z
- Chain Ea
- Large ribosomal subunit protein eL15z
- Chain Ha
- Large ribosomal subunit protein uL15x
- Chain W2
- Transfer RNA; tRNA
Coloring options: