J6_9HA6_001

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

9HA6|1|A|A|223, 9HA6|1|A|C|264

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HA6|1|A|G|45
9HA6|1|A|G|46
*
9HA6|1|A|C|179
9HA6|1|A|G|180
9HA6|1|A|A|181
9HA6|1|A|A|182
9HA6|1|A|C|183
*
9HA6|1|A|G|214
9HA6|1|A|G|215
9HA6|1|A|A|216
9HA6|1|A|A|217
9HA6|1|A|A|218
9HA6|1|A|A|219
9HA6|1|A|G|220
9HA6|1|A|A|221
9HA6|1|A|A|222
9HA6|1|A|A|223
9HA6|1|A|U|224
*
9HA6|1|A|A|231
9HA6|1|A|G|232
9HA6|1|A|A|233
9HA6|1|A|U|234
9HA6|1|A|U|235
*
9HA6|1|A|A|262
9HA6|1|A|G|263
9HA6|1|A|C|264
9HA6|1|A|A|265
9HA6|1|A|G|266
*
9HA6|1|A|C|426
9HA6|1|A|U|427
9HA6|1|A|A|428
9HA6|1|A|A|429
9HA6|1|A|A|430
9HA6|1|A|U|431
9HA6|1|A|A|432
9HA6|1|A|C|433

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34