J6_9HM0_001
3D structure
- PDB id
- 9HM0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CAUAAA*UAAAUUG*UAGUAAUAGAUAAAAAU*AUAAU*AGU*AUG
- Length
- 41 nucleotides
- Bulged bases
- 9HM0|1|AA|A|2316, 9HM0|1|AA|U|2424, 9HM0|1|AA|A|2425, 9HM0|1|AA|A|2426, 9HM0|1|AA|U|2427, 9HM0|1|AA|A|2428, 9HM0|1|AA|A|2430, 9HM0|1|AA|A|2432, 9HM0|1|AA|A|2433, 9HM0|1|AA|U|2611
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9HM0|1|AA|C|2312
9HM0|1|AA|A|2313
9HM0|1|AA|U|2314
9HM0|1|AA|A|2315
9HM0|1|AA|A|2316
9HM0|1|AA|A|2317
*
9HM0|1|AA|U|2375
9HM0|1|AA|A|2376
9HM0|1|AA|A|2377
9HM0|1|AA|A|2378
9HM0|1|AA|U|2379
9HM0|1|AA|U|2380
9HM0|1|AA|G|2381
*
9HM0|1|AA|U|2421
9HM0|1|AA|A|2422
9HM0|1|AA|G|2423
9HM0|1|AA|U|2424
9HM0|1|AA|A|2425
9HM0|1|AA|A|2426
9HM0|1|AA|U|2427
9HM0|1|AA|A|2428
9HM0|1|AA|G|2429
9HM0|1|AA|A|2430
9HM0|1|AA|U|2431
9HM0|1|AA|A|2432
9HM0|1|AA|A|2433
9HM0|1|AA|A|2434
9HM0|1|AA|A|2435
9HM0|1|AA|A|2436
9HM0|1|AA|U|2437
*
9HM0|1|AA|A|2610
9HM0|1|AA|U|2611
9HM0|1|AA|A|2612
9HM0|1|AA|A|2613
9HM0|1|AA|U|2614
*
9HM0|1|AA|A|2637
9HM0|1|AA|G|2638
9HM0|1|AA|U|2639
*
9HM0|1|AA|A|2648
9HM0|1|AA|U|2649
9HM0|1|AA|G|2650
Current chains
- Chain AA
- 21S mitochondrial rRNA
Nearby chains
- Chain 11
- Large ribosomal subunit protein mL38
- Chain 22
- Large ribosomal subunit protein mL40
- Chain 66
- Large ribosomal subunit protein mL46
- Chain EE
- Large ribosomal subunit protein uL5m
- Chain RR
- Large ribosomal subunit protein bL27m
- Chain VV
- Large ribosomal subunit protein bL31m
- Chain XX
- Large ribosomal subunit protein bL33m
- Chain ZZ
- Large ribosomal subunit protein bL35m
- Chain bb
- Large ribosomal subunit protein mL59
- Chain r
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: