J6_9I5T_001

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GG*CGAAC*GGAGAAGAAAA*UGAUU*AUUAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

9I5T|1|A|A|201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I5T|1|A|G|34
9I5T|1|A|G|35
*
9I5T|1|A|C|157
9I5T|1|A|G|158
9I5T|1|A|A|159
9I5T|1|A|A|160
9I5T|1|A|C|161
*
9I5T|1|A|G|192
9I5T|1|A|G|193
9I5T|1|A|A|194
9I5T|1|A|G|195
9I5T|1|A|A|196
9I5T|1|A|A|197
9I5T|1|A|G|198
9I5T|1|A|A|199
9I5T|1|A|A|200
9I5T|1|A|A|201
9I5T|1|A|A|202
*
9I5T|1|A|U|209
9I5T|1|A|G|210
9I5T|1|A|A|211
9I5T|1|A|U|212
9I5T|1|A|U|213
*
9I5T|1|A|A|240
9I5T|1|A|U|241
9I5T|1|A|U|242
9I5T|1|A|A|243
9I5T|1|A|G|244
*
9I5T|1|A|C|449
9I5T|1|A|U|450
9I5T|1|A|A|451
9I5T|1|A|A|452
9I5T|1|A|A|453
9I5T|1|A|U|454
9I5T|1|A|A|455
9I5T|1|A|C|456

Current chains

Chain A

23S rRNA

Nearby chains

Chain 6

Large ribosomal subunit protein bL34