J6_9I5V_001

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GG*CGAAC*GGAGAAGAAAA*UGAUU*AUUAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

9I5V|1|A|A|201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I5V|1|A|G|34
9I5V|1|A|G|35
*
9I5V|1|A|C|157
9I5V|1|A|G|158
9I5V|1|A|A|159
9I5V|1|A|A|160
9I5V|1|A|C|161
*
9I5V|1|A|G|192
9I5V|1|A|G|193
9I5V|1|A|A|194
9I5V|1|A|G|195
9I5V|1|A|A|196
9I5V|1|A|A|197
9I5V|1|A|G|198
9I5V|1|A|A|199
9I5V|1|A|A|200
9I5V|1|A|A|201
9I5V|1|A|A|202
*
9I5V|1|A|U|209
9I5V|1|A|G|210
9I5V|1|A|A|211
9I5V|1|A|U|212
9I5V|1|A|U|213
*
9I5V|1|A|A|240
9I5V|1|A|U|241
9I5V|1|A|U|242
9I5V|1|A|A|243
9I5V|1|A|G|244
*
9I5V|1|A|C|449
9I5V|1|A|U|450
9I5V|1|A|A|451
9I5V|1|A|A|452
9I5V|1|A|A|453
9I5V|1|A|U|454
9I5V|1|A|A|455
9I5V|1|A|C|456

Current chains

Chain A

23S rRNA

Nearby chains

Chain 6

Large ribosomal subunit protein bL34