J6_9I78_001
3D structure
- PDB id
- 9I78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GAGGAC*GGAAAAGAAAC*GGAUU*AACAG*CUAAAUACCGG*CAUC
- Length
- 42 nucleotides
- Bulged bases
- 9I78|1|L1|A|68, 9I78|1|L1|C|322, 9I78|1|L2|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9I78|1|L1|G|23
9I78|1|L1|A|24
9I78|1|L1|G|25
9I78|1|L1|G|26
9I78|1|L1|A|27
9I78|1|L1|C|28
*
9I78|1|L1|G|59
9I78|1|L1|G|60
9I78|1|L1|A|61
9I78|1|L1|A|62
9I78|1|L1|A|63
9I78|1|L1|A|64
9I78|1|L1|G|65
9I78|1|L1|A|66
9I78|1|L1|A|67
9I78|1|L1|A|68
9I78|1|L1|C|69
*
9I78|1|L1|G|76
9I78|1|L1|G|77
9I78|1|L1|A|78
9I78|1|L1|U|79
9I78|1|L1|U|80
*
9I78|1|L1|A|107
9I78|1|L1|A|108
9I78|1|L1|C|109
9I78|1|L1|A|110
9I78|1|L1|G|111
*
9I78|1|L1|C|314
9I78|1|L1|U|315
9I78|1|L1|A|316
9I78|1|L1|A|317
9I78|1|L1|A|318
9I78|1|L1|U|319
9I78|1|L1|A|320
9I78|1|L1|C|321
9I78|1|L1|C|322
9I78|1|L1|G|323
9I78|1|L1|G|324
*
9I78|1|L2|C|32
9I78|1|L2|A|33
9I78|1|L2|U|34
9I78|1|L2|C|35
Current chains
- Chain L1
- 26S rRNA
- Chain L2
- 5.8S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4-like protein
- Chain LL
- 60S ribosomal protein L13
- Chain LN
- Ribosomal protein L15
- Chain Lh
- Dolichyl-diphosphooligosaccharide--protein glycotransferase
- Chain Li
- 60S ribosomal protein L36
- Chain Lj
- Ribosomal protein L37
Coloring options: