J6_9I88_001
3D structure
- PDB id
- 9I88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- GC*GCACAC*GGAAGAGAAAG*CGAUU*AAGAG*CUAAAUAC
- Length
- 37 nucleotides
- Bulged bases
- 9I88|1|A|C|184, 9I88|1|A|A|226
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9I88|1|A|G|45
9I88|1|A|C|46
*
9I88|1|A|G|181
9I88|1|A|C|182
9I88|1|A|A|183
9I88|1|A|C|184
9I88|1|A|A|185
9I88|1|A|C|186
*
9I88|1|A|G|217
9I88|1|A|G|218
9I88|1|A|A|219
9I88|1|A|A|220
9I88|1|A|G|221
9I88|1|A|A|222
9I88|1|A|G|223
9I88|1|A|A|224
9I88|1|A|A|225
9I88|1|A|A|226
9I88|1|A|G|227
*
9I88|1|A|C|234
9I88|1|A|G|235
9I88|1|A|A|236
9I88|1|A|U|237
9I88|1|A|U|238
*
9I88|1|A|A|265
9I88|1|A|A|266
9I88|1|A|G|267
9I88|1|A|A|268
9I88|1|A|G|269
*
9I88|1|A|C|472
9I88|1|A|U|473
9I88|1|A|A|474
9I88|1|A|A|475
9I88|1|A|A|476
9I88|1|A|U|477
9I88|1|A|A|478
9I88|1|A|C|479
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 7
- Large ribosomal subunit protein bL34
- Chain I
- Large ribosomal subunit protein uL4
Coloring options: