J6_9I88_002
3D structure
- PDB id
- 9I88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- UUUA*UUUG*CG*CGCU*ACUUAGUGAUCC*GCUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 9I88|1|A|U|2103, 9I88|1|A|U|2417, 9I88|1|A|G|2455, 9I88|1|A|A|2457, 9I88|1|A|U|2458
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9I88|1|A|U|2101
9I88|1|A|U|2102
9I88|1|A|U|2103
9I88|1|A|A|2104
*
9I88|1|A|U|2270
9I88|1|A|U|2271
9I88|1|A|U|2272
9I88|1|A|G|2273
*
9I88|1|A|C|2285
9I88|1|A|G|2286
*
9I88|1|A|C|2308
9I88|1|A|G|2309
9I88|1|A|C|2310
9I88|1|A|U|2311
*
9I88|1|A|A|2411
9I88|1|A|C|2412
9I88|1|A|U|2413
9I88|1|A|U|2414
9I88|1|A|A|2415
9I88|1|A|G|2416
9I88|1|A|U|2417
9I88|1|A|G|2418
9I88|1|A|A|2419
9I88|1|A|U|2420
9I88|1|A|C|2421
9I88|1|A|C|2422
*
9I88|1|A|G|2448
9I88|1|A|C|2449
9I88|1|A|U|2450
9I88|1|A|C|2451
9I88|1|A|A|2452
9I88|1|A|A|2453
9I88|1|A|C|2454
9I88|1|A|G|2455
9I88|1|A|G|2456
9I88|1|A|A|2457
9I88|1|A|U|2458
9I88|1|A|A|2459
9I88|1|A|A|2460
9I88|1|A|A|2461
9I88|1|A|A|2462
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein bL28
- Chain 6
- Large ribosomal subunit protein bL33A
- Chain 8
- Large ribosomal subunit protein bL35
- Chain G
- Large ribosomal subunit protein uL2
- Chain O
- Large ribosomal subunit protein uL15
- Chain Z
- Large ribosomal subunit protein bL27
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