J6_9JMK_001

3D structure

PDB id

9JMK (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S Ribosomal Subunit precursor state III

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAUC*GAGAUU*AGCAG*CUAAAUAC

Length

38 nucleotides

Bulged bases

9JMK|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9JMK|1|A|G|45
9JMK|1|A|G|46
*
9JMK|1|A|C|179
9JMK|1|A|G|180
9JMK|1|A|A|181
9JMK|1|A|A|182
9JMK|1|A|C|183
*
9JMK|1|A|G|214
9JMK|1|A|G|215
9JMK|1|A|A|216
9JMK|1|A|A|217
9JMK|1|A|A|218
9JMK|1|A|A|219
9JMK|1|A|G|220
9JMK|1|A|A|221
9JMK|1|A|A|222
9JMK|1|A|A|223
9JMK|1|A|U|224
9JMK|1|A|C|225
*
9JMK|1|A|G|230
9JMK|1|A|A|231
9JMK|1|A|G|232
9JMK|1|A|A|233
9JMK|1|A|U|234
9JMK|1|A|U|235
*
9JMK|1|A|A|262
9JMK|1|A|G|263
9JMK|1|A|C|264
9JMK|1|A|A|265
9JMK|1|A|G|266
*
9JMK|1|A|C|426
9JMK|1|A|U|427
9JMK|1|A|A|428
9JMK|1|A|A|429
9JMK|1|A|A|430
9JMK|1|A|U|431
9JMK|1|A|A|432
9JMK|1|A|C|433

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34