J6_9MKK_001

3D structure

PDB id

9MKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GG*CGAACC*GAGGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

39 nucleotides

Bulged bases

9MKK|1|a|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9MKK|1|a|G|45
9MKK|1|a|G|46
*
9MKK|1|a|C|179
9MKK|1|a|G|180
9MKK|1|a|A|181
9MKK|1|a|A|182
9MKK|1|a|C|183
9MKK|1|a|C|184
*
9MKK|1|a|G|212
9MKK|1|a|A|213
9MKK|1|a|G|214
9MKK|1|a|G|215
9MKK|1|a|A|216
9MKK|1|a|A|217
9MKK|1|a|A|218
9MKK|1|a|A|219
9MKK|1|a|G|220
9MKK|1|a|A|221
9MKK|1|a|A|222
9MKK|1|a|A|223
9MKK|1|a|U|224
*
9MKK|1|a|A|231
9MKK|1|a|G|232
9MKK|1|a|A|233
9MKK|1|a|U|234
9MKK|1|a|U|235
*
9MKK|1|a|A|262
9MKK|1|a|G|263
9MKK|1|a|C|264
9MKK|1|a|A|265
9MKK|1|a|G|266
*
9MKK|1|a|C|426
9MKK|1|a|U|427
9MKK|1|a|A|428
9MKK|1|a|A|429
9MKK|1|a|A|430
9MKK|1|a|U|431
9MKK|1|a|A|432
9MKK|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34