J6_9NJV_001

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

9NJV|1|R1|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NJV|1|R1|G|45
9NJV|1|R1|G|46
*
9NJV|1|R1|C|179
9NJV|1|R1|G|180
9NJV|1|R1|A|181
9NJV|1|R1|A|182
9NJV|1|R1|C|183
*
9NJV|1|R1|G|214
9NJV|1|R1|G|215
9NJV|1|R1|A|216
9NJV|1|R1|A|217
9NJV|1|R1|A|218
9NJV|1|R1|A|219
9NJV|1|R1|G|220
9NJV|1|R1|A|221
9NJV|1|R1|A|222
9NJV|1|R1|A|223
9NJV|1|R1|U|224
*
9NJV|1|R1|A|231
9NJV|1|R1|G|232
9NJV|1|R1|A|233
9NJV|1|R1|U|234
9NJV|1|R1|U|235
*
9NJV|1|R1|A|262
9NJV|1|R1|G|263
9NJV|1|R1|C|264
9NJV|1|R1|A|265
9NJV|1|R1|G|266
*
9NJV|1|R1|C|426
9NJV|1|R1|U|427
9NJV|1|R1|A|428
9NJV|1|R1|A|429
9NJV|1|R1|A|430
9NJV|1|R1|U|431
9NJV|1|R1|A|432
9NJV|1|R1|C|433

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 34

50S ribosomal protein L34