J6_9NJV_002

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA

Length

41 nucleotides

Bulged bases

9NJV|1|R1|U|2076, 9NJV|1|R1|A|2388, 9NJV|1|R1|U|2390, 9NJV|1|R1|G|2428, 9NJV|1|R1|A|2430, 9NJV|1|R1|U|2431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NJV|1|R1|U|2074
9NJV|1|R1|U|2075
9NJV|1|R1|U|2076
9NJV|1|R1|A|2077
*
9NJV|1|R1|U|2243
9NJV|1|R1|U|2244
9NJV|1|R1|U|2245
9NJV|1|R1|G|2246
*
9NJV|1|R1|C|2258
9NJV|1|R1|U|2259
*
9NJV|1|R1|A|2281
9NJV|1|R1|G|2282
9NJV|1|R1|C|2283
9NJV|1|R1|A|2284
*
9NJV|1|R1|U|2384
9NJV|1|R1|C|2385
9NJV|1|R1|A|2386
9NJV|1|R1|U|2387
9NJV|1|R1|A|2388
9NJV|1|R1|G|2389
9NJV|1|R1|U|2390
9NJV|1|R1|G|2391
9NJV|1|R1|A|2392
9NJV|1|R1|U|2393
9NJV|1|R1|C|2394
9NJV|1|R1|C|2395
*
9NJV|1|R1|G|2421
9NJV|1|R1|C|2422
9NJV|1|R1|U|2423
9NJV|1|R1|C|2424
9NJV|1|R1|A|2425
9NJV|1|R1|A|2426
9NJV|1|R1|C|2427
9NJV|1|R1|G|2428
9NJV|1|R1|G|2429
9NJV|1|R1|A|2430
9NJV|1|R1|U|2431
9NJV|1|R1|A|2432
9NJV|1|R1|A|2433
9NJV|1|R1|A|2434
9NJV|1|R1|A|2435

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 15

Large ribosomal subunit protein uL15

Chain 2

50S ribosomal protein L2

Chain 27

Large ribosomal subunit protein bL27

Chain 28

50S ribosomal protein L28

Chain 35

Large ribosomal subunit protein bL35