J6_9NO7_001

3D structure

PDB id

9NO7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site 2'-deoxy-A76-fMEAAAKC-peptidyl-tRNAcys at 2.13A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

9NO7|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NO7|1|A|G|44
9NO7|1|A|C|45
*
9NO7|1|A|G|179
9NO7|1|A|G|180
9NO7|1|A|A|181
9NO7|1|A|A|182
9NO7|1|A|C|183
*
9NO7|1|A|G|214
9NO7|1|A|G|215
9NO7|1|A|A|216
9NO7|1|A|G|217
9NO7|1|A|A|218
9NO7|1|A|G|219
9NO7|1|A|G|220
9NO7|1|A|A|221
9NO7|1|A|A|222
9NO7|1|A|A|223
9NO7|1|A|G|224
*
9NO7|1|A|C|231
9NO7|1|A|G|232
9NO7|1|A|A|233
9NO7|1|A|C|234
9NO7|1|A|U|235
*
9NO7|1|A|A|262
9NO7|1|A|C|263
9NO7|1|A|C|264
9NO7|1|A|A|265
9NO7|1|A|G|266
*
9NO7|1|A|C|426
9NO7|1|A|U|427
9NO7|1|A|A|428
9NO7|1|A|A|429
9NO7|1|A|G|430
9NO7|1|A|U|431
9NO7|1|A|A|432
9NO7|1|A|C|433

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L34