J6_9OFV_001

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC

Length

42 nucleotides

Bulged bases

9OFV|1|f|A|67, 9OFV|1|f|U|329, 9OFV|1|i|U|34

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9OFV|1|f|G|22
9OFV|1|f|A|23
9OFV|1|f|G|24
9OFV|1|f|U|25
9OFV|1|f|A|26
9OFV|1|f|C|27
*
9OFV|1|f|G|58
9OFV|1|f|G|59
9OFV|1|f|A|60
9OFV|1|f|A|61
9OFV|1|f|A|62
9OFV|1|f|A|63
9OFV|1|f|G|64
9OFV|1|f|A|65
9OFV|1|f|A|66
9OFV|1|f|A|67
9OFV|1|f|C|68
*
9OFV|1|f|G|75
9OFV|1|f|G|76
9OFV|1|f|A|77
9OFV|1|f|U|78
9OFV|1|f|U|79
*
9OFV|1|f|A|106
9OFV|1|f|A|107
9OFV|1|f|A|108
9OFV|1|f|A|109
9OFV|1|f|G|110
*
9OFV|1|f|C|321
9OFV|1|f|U|322
9OFV|1|f|A|323
9OFV|1|f|A|324
9OFV|1|f|A|325
9OFV|1|f|U|326
9OFV|1|f|A|327
9OFV|1|f|U|328
9OFV|1|f|U|329
9OFV|1|f|G|330
9OFV|1|f|G|331
*
9OFV|1|i|C|32
9OFV|1|i|A|33
9OFV|1|i|U|34
9OFV|1|i|C|35

Current chains

Chain f

25S rRNA

Chain i

5.8S rRNA

Nearby chains

Chain U

60S ribosomal protein L35-A

Chain V

60S ribosomal protein L36-A

Chain W

60S ribosomal protein L37-A

Chain l

Large ribosomal subunit protein uL4A

Chain t

60S ribosomal protein L13-A