J6_9Q3R_001

3D structure

PDB id

9Q3R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

9Q3R|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q3R|1|A|G|45
9Q3R|1|A|G|46
*
9Q3R|1|A|C|179
9Q3R|1|A|G|180
9Q3R|1|A|A|181
9Q3R|1|A|A|182
9Q3R|1|A|C|183
*
9Q3R|1|A|G|214
9Q3R|1|A|G|215
9Q3R|1|A|A|216
9Q3R|1|A|A|217
9Q3R|1|A|A|218
9Q3R|1|A|A|219
9Q3R|1|A|G|220
9Q3R|1|A|A|221
9Q3R|1|A|A|222
9Q3R|1|A|A|223
9Q3R|1|A|U|224
*
9Q3R|1|A|A|231
9Q3R|1|A|G|232
9Q3R|1|A|A|233
9Q3R|1|A|U|234
9Q3R|1|A|U|235
*
9Q3R|1|A|A|262
9Q3R|1|A|G|263
9Q3R|1|A|C|264
9Q3R|1|A|A|265
9Q3R|1|A|G|266
*
9Q3R|1|A|C|426
9Q3R|1|A|U|427
9Q3R|1|A|A|428
9Q3R|1|A|A|429
9Q3R|1|A|A|430
9Q3R|1|A|U|431
9Q3R|1|A|A|432
9Q3R|1|A|C|433

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34