J6_9QIW_002

3D structure

PDB id

9QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CGAG*CGCAA*UGAAG*CGAG*CGG*CACGAG

Length

27 nucleotides

Bulged bases

9QIW|1|L5|A|1420, 9QIW|1|L5|C|1501, 9QIW|1|L5|G|1502

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QIW|1|L5|C|1352
9QIW|1|L5|G|1353
9QIW|1|L5|A|1354
9QIW|1|L5|G|1355
*
9QIW|1|L5|C|1384
9QIW|1|L5|G|1385
9QIW|1|L5|C|1386
9QIW|1|L5|A|1387
9QIW|1|L5|A|1388
*
9QIW|1|L5|U|1395
9QIW|1|L5|G|1396
9QIW|1|L5|A|1397
9QIW|1|L5|A|1398
9QIW|1|L5|G|1399
*
9QIW|1|L5|C|1418
9QIW|1|L5|G|1419
9QIW|1|L5|A|1420
9QIW|1|L5|G|1421
*
9QIW|1|L5|C|1464
9QIW|1|L5|G|1465
9QIW|1|L5|G|1466
*
9QIW|1|L5|C|1499
9QIW|1|L5|A|1500
9QIW|1|L5|C|1501
9QIW|1|L5|G|1502
9QIW|1|L5|A|1503
9QIW|1|L5|G|1504

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LL

60S ribosomal protein L13

Chain LQ

60S ribosomal protein L18

Chain La

60S ribosomal protein L27a

Chain Li

60S ribosomal protein L36