3D structure

PDB id
9QQB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Quaternary complex of a translating ribosome, NAC, NMT1, and NatA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.43 Å

Loop

Sequence
(PSU)UGA*UUUG*CA*(OMU)(OMG)UC*GCCUCACGAUCC*(OMG)GUGUCAGAAAA
Length
38 nucleotides
Bulged bases
9QQB|1|B5|G|3654, 9QQB|1|B5|C|4083, 9QQB|1|B5|A|4122, 9QQB|1|B5|A|4124, 9QQB|1|B5|A|4125
QA status
Modified nucleotides: PSU, OMU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9QQB|1|B5|PSU|3652
9QQB|1|B5|U|3653
9QQB|1|B5|G|3654
9QQB|1|B5|A|3655
*
9QQB|1|B5|U|3934
9QQB|1|B5|U|3935
9QQB|1|B5|U|3936
9QQB|1|B5|G|3937
*
9QQB|1|B5|C|3950
9QQB|1|B5|A|3951
*
9QQB|1|B5|OMU|3973
9QQB|1|B5|OMG|3974
9QQB|1|B5|U|3975
9QQB|1|B5|C|3976
*
9QQB|1|B5|G|4077
9QQB|1|B5|C|4078
9QQB|1|B5|C|4079
9QQB|1|B5|U|4080
9QQB|1|B5|C|4081
9QQB|1|B5|A|4082
9QQB|1|B5|C|4083
9QQB|1|B5|G|4084
9QQB|1|B5|A|4085
9QQB|1|B5|U|4086
9QQB|1|B5|C|4087
9QQB|1|B5|C|4088
*
9QQB|1|B5|OMG|4116
9QQB|1|B5|G|4117
9QQB|1|B5|U|4118
9QQB|1|B5|G|4119
9QQB|1|B5|U|4120
9QQB|1|B5|C|4121
9QQB|1|B5|A|4122
9QQB|1|B5|G|4123
9QQB|1|B5|A|4124
9QQB|1|B5|A|4125
9QQB|1|B5|A|4126
9QQB|1|B5|A|4127

Current chains

Chain B5
28S rRNA

Nearby chains

Chain BA
Large ribosomal subunit protein uL2
Chain BN
Ribosomal protein L15
Chain BQ
eL18
Chain BT
60S ribosomal protein L21
Chain Ba
60S ribosomal protein L27a
Chain Bb
60S ribosomal protein L29
Chain Bo
Large ribosomal subunit protein eL42

Coloring options:

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