Loop J6_9RHU

3D structure

PDB id: 9RHU (explore in PDB, NAKB, or RNA 3D Hub)
Description: Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.65 Å

Loop

Sequence: (PSU)UGA*UUUG*CA*(OMU)(OMG)UC*GCCUCACGAUCC*(OMG)GUGUCAGAAAA
Length: 38 nucleotides
Bulged bases: 9RHU|1|A3|G|3654, 9RHU|1|A3|C|4083, 9RHU|1|A3|A|4122, 9RHU|1|A3|A|4124, 9RHU|1|A3|A|4125
QA status: Modified nucleotides: PSU, OMU, OMG

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9RHU|1|A3|PSU|3652
9RHU|1|A3|U|3653
9RHU|1|A3|G|3654
9RHU|1|A3|A|3655
*
9RHU|1|A3|U|3934
9RHU|1|A3|U|3935
9RHU|1|A3|U|3936
9RHU|1|A3|G|3937
*
9RHU|1|A3|C|3950
9RHU|1|A3|A|3951
*
9RHU|1|A3|OMU|3973
9RHU|1|A3|OMG|3974
9RHU|1|A3|U|3975
9RHU|1|A3|C|3976
*
9RHU|1|A3|G|4077
9RHU|1|A3|C|4078
9RHU|1|A3|C|4079
9RHU|1|A3|U|4080
9RHU|1|A3|C|4081
9RHU|1|A3|A|4082
9RHU|1|A3|C|4083
9RHU|1|A3|G|4084
9RHU|1|A3|A|4085
9RHU|1|A3|U|4086
9RHU|1|A3|C|4087
9RHU|1|A3|C|4088
*
9RHU|1|A3|OMG|4116
9RHU|1|A3|G|4117
9RHU|1|A3|U|4118
9RHU|1|A3|G|4119
9RHU|1|A3|U|4120
9RHU|1|A3|C|4121
9RHU|1|A3|A|4122
9RHU|1|A3|G|4123
9RHU|1|A3|A|4124
9RHU|1|A3|A|4125
9RHU|1|A3|A|4126
9RHU|1|A3|A|4127

Current chains

Chain A3: 28S rRNA

Nearby chains

Chain D3: Large ribosomal subunit protein uL2
Chain J1: Transfer RNA; tRNA
Chain J2: Ribosomal protein L15
Chain M2: eL18
Chain P2: 60S ribosomal protein L21
Chain W2: 60S ribosomal protein L27a
Chain X2: 60S ribosomal protein L29
Chain j2: Ribosomal protein L36a

J6_9RHU_003