Loop J6_9SUM

3D structure

PDB id: 9SUM (explore in PDB, NAKB, or RNA 3D Hub)
Description: CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.99 Å

Loop

Sequence: GACUAC*GGAAAAGAAAC*GGAUU*AAGAG*CUAAAUAUUGG*CAUC
Length: 42 nucleotides
Bulged bases: 9SUM|1|A|A|65, 9SUM|1|A|U|319, 9SUM|1|C|U|34
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: J6_18219.4
Basepair signature: cWW-F-cWW-F-cWW-cSH-cWW-cSS-cWW-cSS-tHW-tWW-F-tWW-F-F-cSS-tSS-tHW-cSS-cWW-tHS-cWW-F-tHS-cWW
Number of instances in this motif group: 5

Unit IDs

9SUM|1|A|G|20
9SUM|1|A|A|21
9SUM|1|A|C|22
9SUM|1|A|U|23
9SUM|1|A|A|24
9SUM|1|A|C|25
*
9SUM|1|A|G|56
9SUM|1|A|G|57
9SUM|1|A|A|58
9SUM|1|A|A|59
9SUM|1|A|A|60
9SUM|1|A|A|61
9SUM|1|A|G|62
9SUM|1|A|A|63
9SUM|1|A|A|64
9SUM|1|A|A|65
9SUM|1|A|C|66
*
9SUM|1|A|G|73
9SUM|1|A|G|74
9SUM|1|A|A|75
9SUM|1|A|U|76
9SUM|1|A|U|77
*
9SUM|1|A|A|104
9SUM|1|A|A|105
9SUM|1|A|G|106
9SUM|1|A|A|107
9SUM|1|A|G|108
*
9SUM|1|A|C|311
9SUM|1|A|U|312
9SUM|1|A|A|313
9SUM|1|A|A|314
9SUM|1|A|A|315
9SUM|1|A|U|316
9SUM|1|A|A|317
9SUM|1|A|U|318
9SUM|1|A|U|319
9SUM|1|A|G|320
9SUM|1|A|G|321
*
9SUM|1|C|C|32
9SUM|1|C|A|33
9SUM|1|C|U|34
9SUM|1|C|C|35

Current chains

Chain A: 25S rRNA
Chain C: 5.8S rRNA

Nearby chains

Chain F: 60S ribosomal protein L4-A
Chain N: 60S ribosomal protein L13
Chain P: Ribosomal protein L15
Chain j: 60S ribosomal protein L35
Chain k: 60S ribosomal protein L36
Chain l: Ribosomal protein L37

J6_9SUM_001