Loop J6_9SUM

3D structure

PDB id: 9SUM (explore in PDB, NAKB, or RNA 3D Hub)
Description: CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.99 Å

Loop

Sequence: UUGA*UUUG*CA*UGUC*GCCUAUCGAUCC*GGUGCCAGAAAA
Length: 38 nucleotides
Bulged bases: 9SUM|1|A|G|2333, 9SUM|1|A|C|2660, 9SUM|1|A|A|2699, 9SUM|1|A|A|2701, 9SUM|1|A|A|2702
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: J6_84807.4
Basepair signature: cWW-cWH-cWH-tSS-cWW-tSS-cWW-F-F-tHH-cWW-tHW-tHW-cWW-cWW-F-F-cWW-F-F-F-F-F
Number of instances in this motif group: 7

Unit IDs

9SUM|1|A|U|2331
9SUM|1|A|U|2332
9SUM|1|A|G|2333
9SUM|1|A|A|2334
*
9SUM|1|A|U|2511
9SUM|1|A|U|2512
9SUM|1|A|U|2513
9SUM|1|A|G|2514
*
9SUM|1|A|C|2527
9SUM|1|A|A|2528
*
9SUM|1|A|U|2550
9SUM|1|A|G|2551
9SUM|1|A|U|2552
9SUM|1|A|C|2553
*
9SUM|1|A|G|2654
9SUM|1|A|C|2655
9SUM|1|A|C|2656
9SUM|1|A|U|2657
9SUM|1|A|A|2658
9SUM|1|A|U|2659
9SUM|1|A|C|2660
9SUM|1|A|G|2661
9SUM|1|A|A|2662
9SUM|1|A|U|2663
9SUM|1|A|C|2664
9SUM|1|A|C|2665
*
9SUM|1|A|G|2693
9SUM|1|A|G|2694
9SUM|1|A|U|2695
9SUM|1|A|G|2696
9SUM|1|A|C|2697
9SUM|1|A|C|2698
9SUM|1|A|A|2699
9SUM|1|A|G|2700
9SUM|1|A|A|2701
9SUM|1|A|A|2702
9SUM|1|A|A|2703
9SUM|1|A|A|2704

Current chains

Chain A: 25S rRNA

Nearby chains

Chain D: 60S ribosomal protein L2-A
Chain P: Ribosomal protein L15
Chain S: 60S ribosomal protein L18-A
Chain V: 60S ribosomal protein L21-A
Chain c: 60S ribosomal protein L28
Chain d: 60S ribosomal protein L29
Chain q: 60S ribosomal protein L44

J6_9SUM_002