Loop J6_9SYR

3D structure

PDB id: 9SYR (explore in PDB, NAKB, or RNA 3D Hub)
Description: Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.55 Å

Loop

Sequence: (PSU)UGA*UUUG*CA*(OMU)(OMG)UC*GCCUCACGAUCC*(OMG)GUGUCAGAAAA
Length: 38 nucleotides
Bulged bases: 9SYR|1|L1|G|3922, 9SYR|1|L1|A|4376, 9SYR|1|L1|A|4378, 9SYR|1|L1|A|4379, 9SYR|1|L1|A|4380
QA status: Modified nucleotides: PSU, OMU, OMG

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9SYR|1|L1|PSU|3920
9SYR|1|L1|U|3921
9SYR|1|L1|G|3922
9SYR|1|L1|A|3923
*
9SYR|1|L1|U|4188
9SYR|1|L1|U|4189
9SYR|1|L1|U|4190
9SYR|1|L1|G|4191
*
9SYR|1|L1|C|4204
9SYR|1|L1|A|4205
*
9SYR|1|L1|OMU|4227
9SYR|1|L1|OMG|4228
9SYR|1|L1|U|4229
9SYR|1|L1|C|4230
*
9SYR|1|L1|G|4331
9SYR|1|L1|C|4332
9SYR|1|L1|C|4333
9SYR|1|L1|U|4334
9SYR|1|L1|C|4335
9SYR|1|L1|A|4336
9SYR|1|L1|C|4337
9SYR|1|L1|G|4338
9SYR|1|L1|A|4339
9SYR|1|L1|U|4340
9SYR|1|L1|C|4341
9SYR|1|L1|C|4342
*
9SYR|1|L1|OMG|4370
9SYR|1|L1|G|4371
9SYR|1|L1|U|4372
9SYR|1|L1|G|4373
9SYR|1|L1|U|4374
9SYR|1|L1|C|4375
9SYR|1|L1|A|4376
9SYR|1|L1|G|4377
9SYR|1|L1|A|4378
9SYR|1|L1|A|4379
9SYR|1|L1|A|4380
9SYR|1|L1|A|4381

Current chains

Chain L1: 28S rRNA

Nearby chains

Chain LE: 60S ribosomal protein L36a
Chain LH: 60S ribosomal protein L15
Chain La: 60S ribosomal protein L8
Chain Lh: 60S ribosomal protein L18
Chain Lk: 60S ribosomal protein L21
Chain Lr: 60S ribosomal protein L27a
Chain Ls: 60S ribosomal protein L29

J6_9SYR_003