Loop J6_9VTH

3D structure

PDB id: 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
Description: cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.7 Å

Loop

Sequence: CAUC*GACUAC*GGAAAAGAAAC*GGAUU*AACAG*CUAAAUACGGG
Length: 42 nucleotides
Bulged bases: 9VTH|1|13|U|37, 9VTH|1|14|A|65, 9VTH|1|14|G|326
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9VTH|1|13|C|35
9VTH|1|13|A|36
9VTH|1|13|U|37
9VTH|1|13|C|38
*
9VTH|1|14|G|20
9VTH|1|14|A|21
9VTH|1|14|C|22
9VTH|1|14|U|23
9VTH|1|14|A|24
9VTH|1|14|C|25
*
9VTH|1|14|G|56
9VTH|1|14|G|57
9VTH|1|14|A|58
9VTH|1|14|A|59
9VTH|1|14|A|60
9VTH|1|14|A|61
9VTH|1|14|G|62
9VTH|1|14|A|63
9VTH|1|14|A|64
9VTH|1|14|A|65
9VTH|1|14|C|66
*
9VTH|1|14|G|73
9VTH|1|14|G|74
9VTH|1|14|A|75
9VTH|1|14|U|76
9VTH|1|14|U|77
*
9VTH|1|14|A|104
9VTH|1|14|A|105
9VTH|1|14|C|106
9VTH|1|14|A|107
9VTH|1|14|G|108
*
9VTH|1|14|C|318
9VTH|1|14|U|319
9VTH|1|14|A|320
9VTH|1|14|A|321
9VTH|1|14|A|322
9VTH|1|14|U|323
9VTH|1|14|A|324
9VTH|1|14|C|325
9VTH|1|14|G|326
9VTH|1|14|G|327
9VTH|1|14|G|328

Current chains

Chain 13: 5.8S rRNA
Chain 14: 25S rRNA

Nearby chains

Chain LD: 60S ribosomal protein L4-like
Chain LO: 60S ribosomal protein L35-like
Chain LS: 60S ribosomal protein L13
Chain LU: Ribosomal protein L15
Chain Lj: 60S ribosomal protein L36
Chain Lk: Ribosomal protein L37

J6_9VTH_001