Loop J6_9VTH

3D structure

PDB id: 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
Description: cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.7 Å

Loop

Sequence: UUGA*UUUG*CA*UGUC*GCCUAACGAUCC*GGUGUCAGAAAA
Length: 38 nucleotides
Bulged bases: 9VTH|1|14|G|2421, 9VTH|1|14|C|2763, 9VTH|1|14|A|2802, 9VTH|1|14|A|2804, 9VTH|1|14|A|2805
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9VTH|1|14|U|2419
9VTH|1|14|U|2420
9VTH|1|14|G|2421
9VTH|1|14|A|2422
*
9VTH|1|14|U|2614
9VTH|1|14|U|2615
9VTH|1|14|U|2616
9VTH|1|14|G|2617
*
9VTH|1|14|C|2630
9VTH|1|14|A|2631
*
9VTH|1|14|U|2653
9VTH|1|14|G|2654
9VTH|1|14|U|2655
9VTH|1|14|C|2656
*
9VTH|1|14|G|2757
9VTH|1|14|C|2758
9VTH|1|14|C|2759
9VTH|1|14|U|2760
9VTH|1|14|A|2761
9VTH|1|14|A|2762
9VTH|1|14|C|2763
9VTH|1|14|G|2764
9VTH|1|14|A|2765
9VTH|1|14|U|2766
9VTH|1|14|C|2767
9VTH|1|14|C|2768
*
9VTH|1|14|G|2796
9VTH|1|14|G|2797
9VTH|1|14|U|2798
9VTH|1|14|G|2799
9VTH|1|14|U|2800
9VTH|1|14|C|2801
9VTH|1|14|A|2802
9VTH|1|14|G|2803
9VTH|1|14|A|2804
9VTH|1|14|A|2805
9VTH|1|14|A|2806
9VTH|1|14|A|2807

Current chains

Chain 14: 25S rRNA

Nearby chains

Chain 10: RNA (204-MER)
Chain LB: 60S ribosomal protein L8-like
Chain LI: 60s ribosomal protein l27a-3
Chain LU: Ribosomal protein L15
Chain LV: 60S ribosomal protein L18-2
Chain LY: 60S ribosomal protein L21-1-like
Chain Ld: 60S ribosomal protein L29
Chain Lp: 60S ribosomal protein L44

J6_9VTH_002