Loop J6_9WW5

3D structure

PDB id: 9WW5 (explore in PDB, NAKB, or RNA 3D Hub)
Description: human 80S ribosome rotated state
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.69 Å

Loop

Sequence: (PSU)UGA*UUUG*CA*(OMU)(OMG)UC*GCCUUACGAUCC*(OMG)GUGUCAGAAAA
Length: 38 nucleotides
Bulged bases: 9WW5|1|AA|G|3922, 9WW5|1|AA|C|4337, 9WW5|1|AA|A|4376, 9WW5|1|AA|A|4378, 9WW5|1|AA|A|4379
QA status: Modified nucleotides: PSU, OMU, OMG

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9WW5|1|AA|PSU|3920
9WW5|1|AA|U|3921
9WW5|1|AA|G|3922
9WW5|1|AA|A|3923
*
9WW5|1|AA|U|4188
9WW5|1|AA|U|4189
9WW5|1|AA|U|4190
9WW5|1|AA|G|4191
*
9WW5|1|AA|C|4204
9WW5|1|AA|A|4205
*
9WW5|1|AA|OMU|4227
9WW5|1|AA|OMG|4228
9WW5|1|AA|U|4229
9WW5|1|AA|C|4230
*
9WW5|1|AA|G|4331
9WW5|1|AA|C|4332
9WW5|1|AA|C|4333
9WW5|1|AA|U|4334
9WW5|1|AA|U|4335
9WW5|1|AA|A|4336
9WW5|1|AA|C|4337
9WW5|1|AA|G|4338
9WW5|1|AA|A|4339
9WW5|1|AA|U|4340
9WW5|1|AA|C|4341
9WW5|1|AA|C|4342
*
9WW5|1|AA|OMG|4370
9WW5|1|AA|G|4371
9WW5|1|AA|U|4372
9WW5|1|AA|G|4373
9WW5|1|AA|U|4374
9WW5|1|AA|C|4375
9WW5|1|AA|A|4376
9WW5|1|AA|G|4377
9WW5|1|AA|A|4378
9WW5|1|AA|A|4379
9WW5|1|AA|A|4380
9WW5|1|AA|A|4381

Current chains

Chain AA: 28S rRNA (3773-MER)

Nearby chains

Chain AD: 60S ribosomal protein L8
Chain AP: 60S ribosomal protein L15
Chain AS: 60S ribosomal protein L18
Chain AV: 60S ribosomal protein L21
Chain Ac: Large ribosomal subunit protein uL15
Chain Ad: 60S ribosomal protein L29
Chain Aq: 60S ribosomal protein L36a

J6_9WW5_003